ColocEM (Undergraduate Thesis)

Collaborators: Dr. Mohammad Saifur Rahman, Dr. Md. Abul Hassan Samee

We are working on Stereo-Seq data, which provides high resolution transcriptomics data in both genome and cellular space, to model and explain the complex cell-cell communication mechanism occuring in the brain tissue of an injured axolotl telencephalon. Our work involves leveraging the degree of spatial coexistence of several cell types along with ligand-receptor analysis to predict gene expressions using a neural network model.